Sean,
It might be worthwhile investing in a proper heat meter - like this one from Sontex.
http://www.dmsltd.com/SONTEX/Supercal_539_Compact_Heat_MeterWhilst DIY systems are interesting to tinker with, you would be guaranteed accuracy with a commercial product such as this, and it would not compromise your plumbing bores.
It has an open-collector pulse output - so easy to read with any pulse counting micro. The LCD display means that you always have a visual tally of heat measured since it was installed.
Ken